species:   Scscl
pid:       PID1536
parent:    Ssc-milR-12
paralog:   
locus:     NW_001820801.1:19368-19437
matures:   ['UUGCCCAACGCCAUCCUGUCCU', 'GAGCGGGAUCACCGGGUAUGU']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820801.1:19368-19437

2 out of bounds
7 alignments
3 proper strand
2 stranded perfect matches

*************************                      ***********************
AAUAAUAAAAUUGCCCAACGCCAUCCUGUCCUCGAAUCGGGGAGCGGGAUCACCGGGUAUGUAUACAAUC
...........(((((...(..((((((((((((...)))))).))))))..).)))))...........
----------UUGCCCAACGCCAUCCUGUCCU-------------------------------------- l=22 a=0 c
-----------------------------------------GAGCGGGAUCACCGGGUAUGU-------- l=21 a=0 c*
------------------------------------UCGGGGAGCGGGAUCACCGG-------------- l=20 a=1 ma
-----------------------------------------GAGCGGGAUCACCGGGUAUGU-------- l=21 a=0 ma*

------------------------------------UCGGGGAGCGGGAUCACCGG-------------- l=20 a=1 (ma)
--------------------------UGUCCUCGAAUCGGGGAGCGa----------------------- l=21 a=1 
------------GCCCAACGCCAUCCUGUCCUCGA----------------------------------- l=23 a=1 

mb-00011
ax-1001011
ku-01
ss-110110001100
fn-001
